Slice 6 onions and place into slow cooker. Drizzle 4 Tablespoon butter, 1 teaspoon salt, 1 teaspoon pepper, 1 teaspoon brown sugar and ¼ teaspoon thyme over onions and toss.
Arrange beef bones on paper towel-lined plate and microwave until well browned, about 8 minutes.
Whisk 2 ½ Tablespoons cornstarch, ⅔ cup apple butter, ¾ cup sherry and ¼ cup soy sauce together in bowl until smooth, then stir into slow cooker. Nestle microwaved bones into onions. Cover and cook on high setting until onions are softened and deep golden brown, about 8 hours.
Discard beef bones. Bring 32 ounces chicken broth and 32 ounces beef broth to boil in covered saucepan over high heat, then stir into slow cooker. Add more salt and pepper to taste, if needed. Let soup sit until heated through and while you prepare the baguettes.
Just before serving, position oven rack 6 inches from broiler element and heat broiler. Lay bread on baking sheet and broil until golden on both sides. Sprinkle cheese over one side of bread and continue to broil until melted and bubbly. Ladle soup into serving bowls and top with broiled cheese bread.