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  • The Main Dish
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Healthy Pumpkin Chocolate Chip Muffins

11 Comments

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These pumpkin muffins are made with dark chocolate, coconut oil, chia seeds and of course, pumpkin puree. Substitute walnuts for the chocolate if desired.

Six Healthy Pumpkin Chocolate muffins on a plate

Pumpkin and chocolate are such strange bedfellows, don’t you think? But they really are meant for each other and these Healthy Pumpkin Chocolate Chip Muffins are love at first bite. After several attempts to add healthy ingredients to this recipe, I think we have a winner.

How to make Healthy Muffins

I bumped up the antioxidants in the chocolate by using dark chocolate chips, which you can omit if desired, maybe add walnuts instead, and I used a mixture of whole-wheat flour and almond flour (the almond flour is critical to this recipe), used coconut oil, and you don’t need much because the pumpkin already makes these muffins moist. The flavor from the coconut oil pairs so well with the pumpkin and chocolate! The recipe calls for chia seeds to compliment the super good-for-you properties of the pumpkin. They’re purely optional and some people might be confused by the tiny popping crunchiness they add to the muffins, but we REALLY like them. I reduced the sugar significantly, but you won’t miss it thanks to the sweet pumpkin puree, chocolate chips and coconut oil. The all-important almond flour has a nutty-sweet flavor so all in all, the sweetness of these muffins is just right. 

Six muffins on a plate, one cut in half

Making Muffins in One Bowl

These tasty, healthy pumpkin muffins mix up quickly by hand in one bowl, plus bake up moist and delicious. AND they just get better as they sit. In fact, I would plan on making them a day ahead if you can. (Photo note: The muffin that’s cut in the picture is super, super moist and was cut while still warm. As the muffins cool, they will achieve a more cake/muffin-like texture and appear less wet but still moist for up to three days.)

Six muffins on a plate with one cut in half

The pumpkin muffins are excellent with or without the chocolate if you’re not a fan of the two flavors together. The muffins are also incredible with chopped walnuts rather than the chocolate chips.

Pumpkin Muffins
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4.84 from 6 votes

Healthy Pumpkin Chocolate Chip Muffins

These muffins are healthier than most with the addition of coconut oil, almond flour and dark chocolate. Quick and easy, and even better after they sit overnight. Try to make them a day ahead of time for an ultimate wow factor!
Course Sweets
Prep Time 5 minutes
Cook Time 23 minutes
Total Time 28 minutes
Servings 15
Calories 198
Author Good Dinner Mom

Ingredients 

  • 1 ⅓ cup pumpkin puree
  • 2 tbsp coconut oil, melted
  • ⅔ cup light brown sugar, firm-packed
  • 2 eggs
  • ½ tsp pure vanilla extract
  • ¾ cup almond flour
  • ¾ cup whole wheat flour, plus 1 tablespoon
  • 1 tsp pumpkin pie spice
  • 1 tsp ground cinnamon
  • 1 tbsp chia seeds, plus extra for sprinkling on top, optional
  • ½ tsp baking soda
  • 1 tsp baking powder
  • ½ cup dark chocolate chips, rough chopped to distribute more throughout the batter

Optional:

  • Chocolate chips may be replaced with walnuts or oatmeal, not instant or quick cooking

Instructions

  • Position oven rack in middle of oven and preheat oven to 350 degrees F. Line muffin tin(s) with cupcake liners. This batch makes 12 full muffins as shown in photos or 15 muffins level with the liners.
  • In a medium bowl, combine 1 ⅓ cup pumpkin puree, 2 Tablespoons coconut oil, ⅔ cup brown sugar, 2 eggs and ½ teaspoon vanilla extract. In the same bowl, add ¾ cup almond flour, ¾ cup wheat flour, 1 teaspoon pumpkin pie spice, 1 teaspoon cinnamon, and 1 teaspoon chia seeds if using over the wet ingredients, and then sprinkle ½ teaspoon baking soda and 1 teaspoon baking powder evenly over everything. Stir until well incorporated and the flours are well mixed in.

Cook's Note:

  • Whole wheat flour can be stirred much more than all-purpose flour without creating a tough finished texture and since the almond flour is gluten-free, it can be stirred in even more with successful results.
  • Now add your ½ cup chocolate chips and give the mixture one last good stir.
  • Fill muffin cups between ½ to ¾ full, depending on the size muffins you want. I filled mine ¾ full. They don't rise a lot, so if you want really big muffins, fill even more. Sprinkle with more chia seeds if you like.
  • Bake for 22-25 minutes, until a toothpick inserted in the center comes out clean and tops begin to dry at the peaks. Place tin on cooling rack and cool completely.
  • For even better muffins, remove from tins when cooled and place in air-tight container for 24 hours before serving.

Notes

  1. You may substitute AP flour for the whole wheat flour if needed but do not substitute the almond flour. It's key to the texture that makes these muffins so special. If you don't have almond flour, wait to make the muffins until you do.
  2. For a change, feel free to substitute fresh butternut squash for the canned pumpkin. Just chop an equal amount of squash, cook in boiling water until soft, puree in the food processor and add 1 tablespoon of brown sugar to the squash. Continue with the rest of the recipe as written.
Nutrition Facts
Healthy Pumpkin Chocolate Chip Muffins
Amount Per Serving
Calories 198 Calories from Fat 81
% Daily Value*
Fat 9g14%
Saturated Fat 5g31%
Cholesterol 27mg9%
Sodium 70mg3%
Potassium 195mg6%
Carbohydrates 26g9%
Fiber 3g13%
Sugar 16g18%
Protein 5g10%
Vitamin A 4275IU86%
Vitamin C 1.2mg1%
Calcium 85mg9%
Iron 1.4mg8%
* Percent Daily Values are based on a 2000 calorie diet.

Loosely adapted from Joy The Baker.
Healthy Pumpkin Muffins with Chocolate Chips Pinterest pin

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Published on September 8, 2016

Comments

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    Recipe Rating




  1. paula says

    November 4, 2022 at 5:56 AM

    4 stars
    Surprisingly my kids enjoyed these even though they said it needs more sweetness lol great recipe Sally!

    Reply
  2. teressa-from FL says

    October 12, 2022 at 5:55 AM

    5 stars
    I just love a good pumpkin muffin! This recipe was so simple and highly enjoyed!!

    Reply
  3. mary harper says

    October 12, 2022 at 5:52 AM

    5 stars
    Who doesn’t want pumpkin muffins in their life?! I know I do! Plus, all of the dark chocolate!!

    Reply
  4. carleigh pughs says

    October 12, 2022 at 5:50 AM

    5 stars
    Great recipe for that meet & greet time after church when it’s your week to bring the snack! These are wonderful Sally, Thank you!

    Reply
  5. Natasha says

    May 2, 2021 at 4:03 AM

    5 stars
    I used almond meal because I didn’t have almond flour and they still turned out lovely and light!

    Reply
  6. Brianna Rees says

    March 24, 2020 at 3:07 PM

    5 stars
    These are amazing!! I didn’t have pumpkin so I used butternut squash with a little bit of brown sugar to sweeten it up, and its incredible!! I’m only 15 and the recipe was really easy to follow!

    Reply
    • Sally Humeniuk says

      March 25, 2020 at 9:31 AM

      Okay, you are incredible! What a great idea to use a butternut squash and I’m making them today using my squash thanks to your genius idea. Keep up the creative recipe development, Bri!

      Reply
  7. Jackie says

    October 2, 2016 at 5:23 PM

    I love these! They’re not heavy and dense like most pumpkin muffins which means I can eat more than one a day 🙂 and the chia seeds give them a little “pop” when you eat ’em!
    Thanks for sharing ??

    Reply
  8. Kevin | Keviniscooking says

    September 12, 2016 at 12:08 PM

    These look beyond… delicious, moist and chock full o’ chocolate. I’m in!

    Reply
About Sally - Good Dinner Mom.

About Good Dinner Mom

My name is Sally and I love to be in the kitchen. Making fresh, unique dishes is my way of showing love for family and friends and I hope that here you’ll find recipes of both healthy and indulgent dishes that will inspire you to cook more at home while sharing some love of your own. more about me

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